6AC5
Crystal structure of RIPK1 death domain GlcNAcylated by EPEC effector NleB
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2014-05-30 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97928 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 55.750, 55.750, 59.150 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.126 - 1.451 |
R-factor | 0.1574 |
Rwork | 0.156 |
R-free | 0.18940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6aci |
RMSD bond length | 0.010 |
RMSD bond angle | 1.057 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.800 | 1.530 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.077 | 0.265 |
Number of reflections | 17069 | 2421 |
<I/σ(I)> | 21.4 | 7.9 |
Completeness [%] | 99.9 | 100 |
Redundancy | 13.2 | 11.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 2.2 M ammonium sulfate, 100 mM Bis-Tris pH 5.5 |