6ABQ
Crystal structure of transcription factor from Listeria monocytogenes
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 173 |
Detector technology | CCD |
Collection date | 2016-12-18 |
Detector | ADSC QUANTUM 1 |
Wavelength(s) | 1.0003 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 73.955, 73.955, 66.313 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.000 - 2.300 |
R-factor | 0.2072 |
Rwork | 0.205 |
R-free | 0.25330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4esf |
RMSD bond length | 0.009 |
RMSD bond angle | 1.314 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 64.000 | 50.000 | 2.340 |
High resolution limit [Å] | 2.300 | 6.240 | 2.300 |
Rmerge | 0.045 | 0.041 | 0.075 |
Rmeas | 0.049 | 0.046 | 0.081 |
Rpim | 0.018 | 0.019 | 0.030 |
Number of reflections | 9616 | 509 | 458 |
<I/σ(I)> | 22.4 | ||
Completeness [%] | 99.7 | 95 | 100 |
Redundancy | 7.1 | 5.8 | 7.3 |
CC(1/2) | 0.997 | 0.995 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 1 M lithium chloride, 0.1 M citric acid, pH 5.5, and 30% polyethylene glycol 6000 |