6AAV
Crystal structure of alpha-glucosyl transfer enzyme, XgtA at 1.72 angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-19 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 73.071, 83.478, 180.785 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.861 - 1.720 |
R-factor | 0.2195 |
Rwork | 0.218 |
R-free | 0.25430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wy1 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.076 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | PHASER (2.8.0) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.861 | 48.860 | 1.750 |
High resolution limit [Å] | 1.720 | 9.420 | 1.720 |
Rmerge | 0.098 | 0.035 | 1.819 |
Rmeas | 0.102 | 0.037 | 1.891 |
Rpim | 0.028 | 0.011 | 0.513 |
Number of reflections | 118157 | 841 | 5721 |
<I/σ(I)> | 14.6 | ||
Completeness [%] | 99.9 | 99.4 | 98.7 |
Redundancy | 13.2 | 11.3 | 13.3 |
CC(1/2) | 0.999 | 0.999 | 0.703 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 5 mM citrate phosphate buffer pH 7.0, 50 mM Tris-HCl buffer pH 8.2, 13%(w/v) PEG 10000 |