6A9B
T4 dCMP hydroxymethylase structure solved by I-SAD using a home source
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-03-14 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 52.603, 74.982, 155.345 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.301 - 2.010 |
R-factor | 0.1632 |
Rwork | 0.160 |
R-free | 0.19150 |
Structure solution method | SAD |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.040 |
High resolution limit [Å] | 2.010 | 5.450 | 2.010 |
Rmerge | 0.059 | 0.045 | 0.208 |
Rmeas | 0.064 | 0.049 | 0.225 |
Rpim | 0.024 | 0.019 | 0.085 |
Total number of observations | 145060 | ||
Number of reflections | 20840 | 1132 | 1026 |
<I/σ(I)> | 27.3 | ||
Completeness [%] | 99.8 | 98.4 | 100 |
Redundancy | 7 | 6.5 | 6.8 |
CC(1/2) | 0.999 | 0.979 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 298 | 0.1 M Tris-HCl pH 8.5 0.96 M sodium citrate |