Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6A4T

Crystal structure of Peptidase E from Deinococcus radiodurans R1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsRRCAT INDUS-2 BEAMLINE PX-BL21
Synchrotron siteRRCAT INDUS-2
BeamlinePX-BL21
Temperature [K]100
Detector technologyCCD
Collection date2014-04-22
DetectorMAR CCD 165 mm
Wavelength(s)0.97947
Spacegroup nameP 41 21 2
Unit cell lengths95.417, 95.417, 92.433
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.709 - 2.000
R-factor0.2746
Rwork0.273
R-free0.29910
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3l4e
RMSD bond length0.002
RMSD bond angle0.568
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.11.1_2575))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.7102.050
High resolution limit [Å]2.0002.000
Rmerge0.0990.748
Rmeas0.1050.790
Rpim0.0340.254
Number of reflections294882138
<I/σ(I)>14.23
Completeness [%]100.0100
Redundancy9.59.6
CC(1/2)0.9990.926
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH7.52940.1 M Tris-Cl pH 7.5, 0.2 M magnesium chloride, 22 % PEG 8000

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon