6A4T
Crystal structure of Peptidase E from Deinococcus radiodurans R1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | RRCAT INDUS-2 BEAMLINE PX-BL21 |
Synchrotron site | RRCAT INDUS-2 |
Beamline | PX-BL21 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-22 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.97947 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 95.417, 95.417, 92.433 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.709 - 2.000 |
R-factor | 0.2746 |
Rwork | 0.273 |
R-free | 0.29910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3l4e |
RMSD bond length | 0.002 |
RMSD bond angle | 0.568 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.710 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.099 | 0.748 |
Rmeas | 0.105 | 0.790 |
Rpim | 0.034 | 0.254 |
Number of reflections | 29488 | 2138 |
<I/σ(I)> | 14.2 | 3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 9.5 | 9.6 |
CC(1/2) | 0.999 | 0.926 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7.5 | 294 | 0.1 M Tris-Cl pH 7.5, 0.2 M magnesium chloride, 22 % PEG 8000 |