6A4M
Structure of urate oxidase from Bacillus subtilis 168
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-23 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.978 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 133.050, 133.050, 90.227 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.000 - 2.600 |
R-factor | 0.2252 |
Rwork | 0.223 |
R-free | 0.27080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wlv |
RMSD bond length | 0.007 |
RMSD bond angle | 1.144 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.162 | 0.064 | 1.068 |
Rmeas | 0.164 | 0.065 | 1.083 |
Rpim | 0.028 | 0.011 | 0.177 |
Number of reflections | 15004 | 846 | 722 |
<I/σ(I)> | 2.9 | ||
Completeness [%] | 99.8 | 98 | 100 |
Redundancy | 33.6 | 26.9 | 35.6 |
CC(1/2) | 0.999 | 0.919 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Tris-HCl, 0.2 M NaAc.3H2O, 24% w/v PEG4000, pH 8.12 |