6ZVF
Crystal structure of the recombinant Fab fragment derived from the hybridoma M3/38 in complex with a human Galectin-3 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91840 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 94.134, 61.270, 80.909 |
Unit cell angles | 90.00, 103.36, 90.00 |
Refinement procedure
Resolution | 50.980 - 1.900 |
R-factor | 0.2047 |
Rwork | 0.203 |
R-free | 0.24340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3o2v |
RMSD bond length | 0.007 |
RMSD bond angle | 1.519 |
Data reduction software | MOSFLM (7.2.1) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.719 | 50.925 | 2.000 |
High resolution limit [Å] | 1.661 | 6.010 | 1.900 |
Rmerge | 0.047 | 0.411 | |
Rmeas | 0.096 | 0.051 | 0.451 |
Rpim | 0.039 | 0.020 | 0.182 |
Total number of observations | 197033 | 6633 | 29836 |
Number of reflections | 34354 | 1137 | 5068 |
<I/σ(I)> | 10.9 | 22.1 | 4 |
Completeness [%] | 97.0 | 96.5 | 97.9 |
Redundancy | 5.7 | 5.8 | 5.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | polyethylene glycol 4000 |