Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6ZE9

Non-native fold of the putative VPS39 zinc finger domain

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2015-12-06
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)1.28096
Spacegroup nameP 42 2 2
Unit cell lengths104.178, 104.178, 39.423
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.590 - 2.900
R-factor0.2393
Rwork0.238
R-free0.26860
Structure solution methodMAD
RMSD bond length0.008
RMSD bond angle1.070
Data reduction softwarexia2 (0.5.902-gffa11588-dials-1.14)
Data scaling softwarexia2 (0.5.902-gffa11588-dials-1.14)
Phasing softwareCRANK2 (2.0.229)
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.5902.950
High resolution limit [Å]2.9002.900
Rmerge0.0751.178
Rmeas0.0861.344
Rpim0.0410.632
Number of reflections5148247
<I/σ(I)>10.10.9
Completeness [%]99.3100
Redundancy4.14.3
CC(1/2)0.9960.602
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5293100 mM HEPES pH 7.5, 200 mM ammonium acetate, 45% (v/v) 2-methyl-2,4-pentanediol

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon