6ZE9
Non-native fold of the putative VPS39 zinc finger domain
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-06 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.28096 |
Spacegroup name | P 42 2 2 |
Unit cell lengths | 104.178, 104.178, 39.423 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.590 - 2.900 |
R-factor | 0.2393 |
Rwork | 0.238 |
R-free | 0.26860 |
Structure solution method | MAD |
RMSD bond length | 0.008 |
RMSD bond angle | 1.070 |
Data reduction software | xia2 (0.5.902-gffa11588-dials-1.14) |
Data scaling software | xia2 (0.5.902-gffa11588-dials-1.14) |
Phasing software | CRANK2 (2.0.229) |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.590 | 2.950 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.075 | 1.178 |
Rmeas | 0.086 | 1.344 |
Rpim | 0.041 | 0.632 |
Number of reflections | 5148 | 247 |
<I/σ(I)> | 10.1 | 0.9 |
Completeness [%] | 99.3 | 100 |
Redundancy | 4.1 | 4.3 |
CC(1/2) | 0.996 | 0.602 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 100 mM HEPES pH 7.5, 200 mM ammonium acetate, 45% (v/v) 2-methyl-2,4-pentanediol |