6ZCD

VEGF-A 13:107 crystallized with 1C bicyclic peptide

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ESRF BEAMLINE ID23-1
Synchrotron site	ESRF
Beamline	ID23-1
Temperature [K]	80
Detector technology	PIXEL
Collection date	2016-02-06
Detector	DECTRIS PILATUS3 2M
Wavelength(s)	1.272
Spacegroup name	P 21 21 21
Unit cell lengths	53.644, 55.699, 77.210
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	45.170 - 1.800
R-factor	0.1924
Rwork	0.190
R-free	0.24180
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	1flt
RMSD bond length	0.010
RMSD bond angle	1.142
Data reduction software	XDS
Data scaling software	SCALA
Phasing software	PHENIX (1.18_3855)
Refinement software	PHENIX (1.18_3855)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	53.640	1.840
High resolution limit [Å]	1.800	1.800
Rmerge	0.101	0.902
Rmeas	0.107	0.951
Rpim	0.047	0.419
Number of reflections	22094	1271
<I/σ(I)>	11.5	2.3
Completeness [%]	100.0	100
Redundancy	9.8	10
CC(1/2)	0.998	0.957

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	4.5	293	(VEGF)2:2 PEPTIDE_1C COMPLEX PURIFIED ON SEC AND CONCENTRATED AT 13.5MG/ML IN TRIS/HCL 10MM PH 8.5. MIX 1UL OF COMPLEX WITH 1 UL OF RESERVOIR : NAOAC/HCL 100MM PH 4.5 / MPD 35% (V/V) / (NH4)2PO4 150MM