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6Z2Z

M2 mutant (R111K:Y134F:T54V:R132Q:P39Y:R59Y) of human cellular retinoic acid binding protein II - 2a conjugate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-03
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.97625
Spacegroup nameP 31 2 1
Unit cell lengths58.794, 58.794, 101.152
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution50.920 - 2.550
R-factor0.2078
Rwork0.205
R-free0.26500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4yfp
RMSD bond length0.012
RMSD bond angle1.679
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]101.1502.690
High resolution limit [Å]2.5502.550
Rmerge0.0600.454
Rmeas0.0640.485
Rpim0.0230.170
Number of reflections6999986
<I/σ(I)>16.63.5
Completeness [%]100.0100
Redundancy7.98
CC(1/2)0.9970.948
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2810.2 M sodium malonate pH 7 and 20% w/v polyethylene glycol 3,350

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PDB entries from 2024-05-15

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