6YUQ
Capsule O-acetyltransferase of Neisseria meningitidis serogroup A in complex with polysaccharide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-24 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 137.483, 137.483, 70.253 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.270 - 1.950 |
R-factor | 0.21 |
Rwork | 0.209 |
R-free | 0.22070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6yuo |
RMSD bond length | 0.006 |
RMSD bond angle | 0.754 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.18_3845) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.620 | 48.620 | 2.020 |
High resolution limit [Å] | 1.950 | 4.200 | 1.950 |
Rmerge | 0.059 | 0.040 | 2.818 |
Rmeas | 0.060 | 0.041 | 2.874 |
Rpim | 0.012 | 0.008 | 0.565 |
Number of reflections | 49502 | 5245 | 4847 |
<I/σ(I)> | 25.1 | 80.5 | 1.2 |
Completeness [%] | 99.9 | 99.9 | 99.9 |
Redundancy | 26.2 | 23.7 | 25.6 |
CC(1/2) | 0.999 | 0.998 | 0.774 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | Native wild type CsaC crystallized in sitting drop setups at concentrations of approx. 18mg/ml. Fine screens around initial screening conditions resulted in many isomorphous crystals. Mother liquor contained 50mM HEPES pH 7.0, 100 mM HEPES pH 7.6, 100mM NaCl, 5mM MgCl2, 1mM EDTA, and 31-42% PEG200. Good quality crystals grew at 4, 12, and 18C. |