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6YSB

Crystal structure of Malus domestica Double Bond Reductase (MdDBR) apo form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsELETTRA BEAMLINE 5.2R
Synchrotron siteELETTRA
Beamline5.2R
Temperature [K]100
Detector technologyPIXEL
Collection date2018-06-04
DetectorDECTRIS PILATUS3 S 2M
Wavelength(s)1.0
Spacegroup nameC 1 2 1
Unit cell lengths156.609, 68.666, 68.944
Unit cell angles90.00, 111.38, 90.00
Refinement procedure
Resolution48.620 - 1.200
R-factor0.1633
Rwork0.162
R-free0.19750
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2j3h
RMSD bond length0.018
RMSD bond angle2.126
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.7201.220
High resolution limit [Å]1.2001.200
Number of reflections21063610469
<I/σ(I)>12.1
Completeness [%]99.4
Redundancy3.6
CC(1/2)0.9980.784
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION293.1512.5% PEG 1000, 12.5% PEG 3350, 12.5% MPD, 0.03 M magnesium chloride, 0.03 M calcium chloride, 0.03 M sodium chloride, 0.03 M sodium bromide, 0.03 M sodium iodide in 0.1 M MES/imidazole pH 6.5.

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