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6YRT

Transaldolase variant T30D from T. acidophilum in complex with D-fructose 6-phosphate Schiff-base intermediate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2017-07-03
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9763
Spacegroup nameC 2 2 21
Unit cell lengths149.042, 172.522, 100.402
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution112.784 - 1.650
R-factor0.1689
Rwork0.168
R-free0.18660
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3s0c
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]112.784100.0001.750
High resolution limit [Å]1.65050.0001.650
Rmerge0.0390.0391.103
Rmeas0.0410.0481.145
Total number of observations2087960
Number of reflections153963524717
<I/σ(I)>29.5933.852.91
Completeness [%]99.662.599.8
Redundancy13.5612.613.761
CC(1/2)0.9990.9960.913
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293188 mM ammonium acetate (pH 4.4), 10% (w/v) PEG 6000, and 25% (v/v) glycerol

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PDB entries from 2024-05-15

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