6YDV
Crystal Structure of the Jmjc Domain of Human JMJD1B in complex with FM001511a from the DSPL fragment library
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I02 |
| Synchrotron site | Diamond |
| Beamline | I02 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-09-30 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9282 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 57.600, 93.790, 92.610 |
| Unit cell angles | 90.00, 107.50, 90.00 |
Refinement procedure
| Resolution | 54.934 - 2.070 |
| Rwork | 0.170 |
| R-free | 0.21370 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6rbj |
| RMSD bond length | 0.004 |
| RMSD bond angle | 1.309 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 54.934 | 9.260 |
| High resolution limit [Å] | 2.070 | 2.070 |
| Rmerge | 0.085 | 0.961 |
| Rmeas | 0.130 | |
| Rpim | 0.069 | 0.713 |
| Number of reflections | 56778 | 4190 |
| <I/σ(I)> | 10.2 | 1.3 |
| Completeness [%] | 99.2 | 99.1 |
| Redundancy | 3.4 | 3.5 |
| CC(1/2) | 0.996 | 0.556 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 0.1M bis-tris pH 5.5, 24% PEG3350, 0.4M magnesium chloride |
