Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YDL

Substrate-free beta-phosphoglucomutase from Lactococcus lactis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2016-02-26
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.92819
Spacegroup nameP 21 21 21
Unit cell lengths53.280, 54.070, 81.850
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.650 - 1.520
R-factor0.18415
Rwork0.183
R-free0.21606
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2whe
Data reduction softwareXDS
Data scaling softwarexia2 (0.4.0.0)
Phasing softwarePHASER (2.5.7)
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]44.65044.6501.560
High resolution limit [Å]1.5206.8001.520
Rmerge0.0440.0171.190
Rmeas0.0510.0201.428
Rpim0.0190.0070.561
Number of reflections368154862658
<I/σ(I)>18.871.61.3
Completeness [%]99.398.699.3
Redundancy7.26.46.3
CC(1/2)1.0001.0000.500
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5290PEG 4000, sodium acetate (200 mM), tris (100 mM), HEPES (50 mM), magnesium chloride (5 mM), EDTA (1 mM), sodium azide (2 mM), beta-phosphoglucomutase (0.6 mM)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon