6Y5P
RING-DTC domain of Deltex1 bound to NAD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-07 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.91587 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.850, 85.254, 130.949 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.475 - 1.740 |
R-factor | 0.1867 |
Rwork | 0.185 |
R-free | 0.21370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6y5n |
RMSD bond length | 0.010 |
RMSD bond angle | 1.103 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 66.850 | 1.790 |
High resolution limit [Å] | 1.740 | 1.740 |
Rmerge | 0.056 | 1.334 |
Rpim | 0.036 | 0.898 |
Number of reflections | 148052 | 5662 |
<I/σ(I)> | 16 | 1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.4 | 5.9 |
CC(1/2) | 0.999 | 0.521 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 292 | 0.16M Calcium acetate hydrate, 0.08MSodium cacodylate pH 6.5, 14.4% w/v PEG 8000, 20% v/v Glycerol |