6Y21
Crystal structure of delta466-491 cystathionine beta-synthase from Toxoplasma gondii with L-Cystathionine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-24 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 83.006, 83.006, 421.373 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 68.034 - 3.600 |
R-factor | 0.2639 |
Rwork | 0.263 |
R-free | 0.29050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jbq |
Data reduction software | XDS |
Data scaling software | Aimless |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 210.687 | 210.686 | 3.801 |
High resolution limit [Å] | 3.547 | 10.959 | 3.547 |
Rmerge | 0.229 | 0.064 | 2.695 |
Rmeas | 0.235 | 0.067 | 2.769 |
Rpim | 0.055 | 0.017 | 0.630 |
Total number of observations | 327391 | 12439 | 16808 |
Number of reflections | 17599 | 878 | 882 |
<I/σ(I)> | 11.4 | 32.7 | 1.4 |
Completeness [%] | 90.8 | 99.9 | 51.1 |
Redundancy | 18.6 | 14.2 | 19.1 |
CC(1/2) | 0.991 | 0.990 | 0.490 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 291 | 9% PEG 3350, 0.1M MES pH 6.1 |