6XXN
Crystal structure of NB7, a nanobody targeting prostate specific membrane antigen
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-20 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.563, 171.716, 83.479 |
Unit cell angles | 90.00, 91.81, 90.00 |
Refinement procedure
Resolution | 47.200 - 2.650 |
R-factor | 0.1844 |
Rwork | 0.182 |
R-free | 0.23090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5m7q |
RMSD bond length | 0.012 |
RMSD bond angle | 1.645 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.200 | 2.770 |
High resolution limit [Å] | 2.650 | 2.650 |
Rpim | 0.067 | |
Number of reflections | 45149 | 7226 |
<I/σ(I)> | 8.49 | |
Completeness [%] | 98.9 | |
Redundancy | 4.5 | |
CC(1/2) | 0.993 | 0.485 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1.7M (NH4)2SO4, 6.57% 2-Propanol |