6XX2
Crystal structure of the c-Src SH3 domain H122R-Q128K mutant in complex with Cu(II) at pH 7.5 co-crystallized with methyl beta-cyclodextrin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-07-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97949 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 35.606, 35.606, 81.228 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.830 - 1.250 |
R-factor | 0.1799 |
Rwork | 0.178 |
R-free | 0.20670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jz4 |
Data reduction software | XDS |
Data scaling software | Aimless (0.2.8) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 81.230 | 81.230 | 1.270 |
High resolution limit [Å] | 1.250 | 6.850 | 1.250 |
Rmerge | 0.045 | 0.061 | 0.610 |
Rmeas | 0.048 | 0.067 | 0.652 |
Rpim | 0.016 | 0.028 | 0.229 |
Total number of observations | 826 | 6905 | |
Number of reflections | 31902 | 136 | 863 |
<I/σ(I)> | 28.9 | 47.7 | 3.4 |
Completeness [%] | 100.0 | 97.5 | 100 |
Redundancy | 9.2 | 6.1 | 8 |
CC(1/2) | 0.999 | 0.992 | 0.934 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 1.9 M ammonium sulfate, 0.1 HEPES, 5 mM copper chloride, 5 mM methyl beta-cyclodextrin |