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6XX2

Crystal structure of the c-Src SH3 domain H122R-Q128K mutant in complex with Cu(II) at pH 7.5 co-crystallized with methyl beta-cyclodextrin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2013-07-13
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97949
Spacegroup nameP 31 2 1
Unit cell lengths35.606, 35.606, 81.228
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution28.830 - 1.250
R-factor0.1799
Rwork0.178
R-free0.20670
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4jz4
Data reduction softwareXDS
Data scaling softwareAimless (0.2.8)
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]81.23081.2301.270
High resolution limit [Å]1.2506.8501.250
Rmerge0.0450.0610.610
Rmeas0.0480.0670.652
Rpim0.0160.0280.229
Total number of observations8266905
Number of reflections31902136863
<I/σ(I)>28.947.73.4
Completeness [%]100.097.5100
Redundancy9.26.18
CC(1/2)0.9990.9920.934
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52981.9 M ammonium sulfate, 0.1 HEPES, 5 mM copper chloride, 5 mM methyl beta-cyclodextrin

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PDB entries from 2024-05-15

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