6XWM
Mechanism of substrate release in neurotransmitter:sodium symporters: the structure of LeuT in an inward-facing occluded conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9999 |
Spacegroup name | P 1 |
Unit cell lengths | 77.848, 83.985, 86.939 |
Unit cell angles | 65.38, 89.77, 64.56 |
Refinement procedure
Resolution | 45.046 - 2.600 |
R-factor | 0.212 |
Rwork | 0.211 |
R-free | 0.23300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tt3 |
Data reduction software | XDS (VERSION Oct 15, 2015 BUILT=20151231) |
Data scaling software | Aimless (0.5.8) |
Phasing software | PHENIX (1.16_3549) |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.620 | 46.620 | 2.680 |
High resolution limit [Å] | 2.600 | 10.720 | 2.600 |
Rmerge | 0.079 | 0.034 | 1.067 |
Rmeas | 0.087 | 0.037 | 1.166 |
Rpim | 0.034 | 0.014 | 0.465 |
Total number of observations | 332230 | 4874 | 28109 |
Number of reflections | 53681 | 760 | 4651 |
<I/σ(I)> | 11.1 | 34.9 | 1.4 |
Completeness [%] | 98.8 | 98.2 | 98.2 |
Redundancy | 6.2 | 6.4 | 6 |
CC(1/2) | 0.999 | 0.999 | 0.722 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | HEPES-NaOH, sodium formate, PEG 3350, glycerol |