6XQX
Crystal structure of the catalytic domain of PBP2 S310A from Neisseria gonorrhoeae with the H514A mutation at pH 7.5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.520, 77.310, 88.180 |
Unit cell angles | 90.00, 91.62, 90.00 |
Refinement procedure
Resolution | 44.500 - 2.150 |
R-factor | 0.2172 |
Rwork | 0.216 |
R-free | 0.24240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6p53 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.614 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (1.17.1_3660) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.500 | 2.230 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmeas | 0.133 | 0.389 |
Number of reflections | 31251 | 3231 |
<I/σ(I)> | 7.07 | 3.16 |
Completeness [%] | 95.6 | 97.9 |
Redundancy | 5.6 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 15% PEG 1500, 0.062 M Tris pH 7.5, 50 mM KCl |