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6XP4

Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron siteAustralian Synchrotron
BeamlineMX1
Temperature [K]100
Detector technologyCCD
Collection date2018-04-18
DetectorADSC QUANTUM 210r
Wavelength(s)0.9537
Spacegroup nameP 21 21 21
Unit cell lengths93.430, 101.640, 114.100
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.749 - 2.000
R-factor0.1317
Rwork0.129
R-free0.18790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4kpc
Data reduction softwareiMOSFLM (7.0.072)
Data scaling softwareAimless (0.6.3)
Phasing softwarePHASER (2.8.2)
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.75049.7502.040
High resolution limit [Å]2.0009.8002.000
Rmerge0.0900.0300.347
Rmeas0.0940.0320.367
Rpim0.0270.0090.116
Total number of observations768998849435452
Number of reflections687137343884
<I/σ(I)>21.141.66.6
Completeness [%]93.199.486.6
Redundancy11.211.69.1
CC(1/2)0.9980.9990.951
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7289.1521% PEG 3350, 0.45 M sodium malonate

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PDB entries from 2024-05-15

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