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6XP0

Structure of human PYCR1 complexed with N-formyl L-proline

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-16
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9792
Spacegroup nameP 21 21 2
Unit cell lengths164.630, 88.513, 115.462
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution67.026 - 1.950
R-factor0.1873
Rwork0.187
R-free0.20910
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)5uau
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.14)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]82.32082.3201.980
High resolution limit [Å]1.95010.6801.950
Rmerge0.0800.0391.304
Rmeas0.0940.0461.525
Rpim0.0480.0230.774
Total number of observations435036280722723
Number of reflections1202878026045
<I/σ(I)>7.221.30.8
Completeness [%]97.893.999.7
Redundancy3.63.53.8
CC(1/2)0.9960.9960.483
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP295Crystallization reservoir contained 250 mM Li2SO4, 19% (w/v) PEG 3350, and 0.1 M HEPES at pH 7.5. Crystal was soaked in cryobuffer containing 100 mM N-formyl L-proline and 20% PEG 200.

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PDB entries from 2024-05-15

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