6XIO
ADP-dependent kinase complex with fructose-6-phosphate and ADPbetaS
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-06 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.45867 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.574, 79.589, 108.574 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.850 - 3.120 |
R-factor | 0.2426 |
Rwork | 0.241 |
R-free | 0.27170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6c8z |
RMSD bond length | 0.004 |
RMSD bond angle | 0.742 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.850 | 3.230 |
High resolution limit [Å] | 3.120 | 3.120 |
Rmerge | 0.151 | 0.841 |
Rmeas | 0.157 | 0.879 |
Rpim | 0.045 | 0.253 |
Number of reflections | 10902 | 1053 |
<I/σ(I)> | 16.5 | 3.02 |
Completeness [%] | 98.3 | 99.53 |
Redundancy | 12.4 | 12.1 |
CC(1/2) | 0.996 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.2 | 292 | Protein Condition: F6P 6 mM, mM ADPbs 2.4 mM, MgCl2 7.4 mM , HEPES 25 mM pH 7.8, NaCl 200 mM and 2-mercaptoethanol 1 mM; Reservoir Condition: PEG 20,000 8.4% w/V, MgCl2 0.2M, Sodium citrate 0.1M pH 4.5 |