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6XIO

ADP-dependent kinase complex with fructose-6-phosphate and ADPbetaS

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE W01B-MX2
Synchrotron siteLNLS
BeamlineW01B-MX2
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-06
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.45867
Spacegroup nameP 21 21 21
Unit cell lengths67.574, 79.589, 108.574
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.850 - 3.120
R-factor0.2426
Rwork0.241
R-free0.27170
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6c8z
RMSD bond length0.004
RMSD bond angle0.742
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.8503.230
High resolution limit [Å]3.1203.120
Rmerge0.1510.841
Rmeas0.1570.879
Rpim0.0450.253
Number of reflections109021053
<I/σ(I)>16.53.02
Completeness [%]98.399.53
Redundancy12.412.1
CC(1/2)0.9960.900
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.2292Protein Condition: F6P 6 mM, mM ADPbs 2.4 mM, MgCl2 7.4 mM , HEPES 25 mM pH 7.8, NaCl 200 mM and 2-mercaptoethanol 1 mM; Reservoir Condition: PEG 20,000 8.4% w/V, MgCl2 0.2M, Sodium citrate 0.1M pH 4.5

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