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6XHB

Crystal Structure of wild-type KRAS (GMPPNP-bound) in complex with RAS-binding domain (RBD) and cysteine-rich domain (CRD) of RAF1/CRAF (crystal form II)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2018-04-04
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9791
Spacegroup nameP 6 2 2
Unit cell lengths133.984, 133.984, 89.275
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.650 - 2.500
R-factor0.19
Rwork0.186
R-free0.22130
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6vjj 1far
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.65048.6502.650
High resolution limit [Å]2.5007.4202.500
Rmerge0.0890.0280.860
Rmeas0.0970.0310.937
Total number of observations102583
Number of reflections166427072645
<I/σ(I)>14.0347.081.91
Completeness [%]98.493.499.2
Redundancy6.1645.4096.265
CC(1/2)0.9990.9990.740
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5293100 mM sodium cacodylate pH 6.5, 200 mM sodium citrate, 15% 2-propanol, 0.25% (w/v) n-octyl-beta-D-glucoside, 0.35 mM D-myo-phosphatidylinositol 3,4,5-triphosphate, and 0.25% (w/v) n-dodecyl-beta-D-maltoside

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PDB entries from 2024-05-15

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