6XEE
Crystal Structure of the PTP1B YopH WPD loop Chimera 4 apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-1 |
Synchrotron site | SSRL |
Beamline | BL9-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-01-31 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97946 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 88.402, 88.402, 103.949 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.676 - 2.501 |
R-factor | 0.1752 |
Rwork | 0.173 |
R-free | 0.21480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qkp |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 5.380 | 2.500 |
Rmerge | 0.137 | 0.082 | 0.649 |
Rmeas | 0.142 | 0.085 | 0.696 |
Rpim | 0.033 | 0.020 | 0.243 |
Total number of observations | 261786 | ||
Number of reflections | 16320 | 1728 | 1566 |
<I/σ(I)> | 7.2 | ||
Completeness [%] | 97.7 | 96.2 | 95.6 |
Redundancy | 16 | 17.6 | 7.2 |
CC(1/2) | 0.998 | 0.773 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.8 | 295 | tris hydrochloride pH 7.8, magnesium acetate tetrahydrate, PEG 8000 and benzamidine |