6XEA
Crystal Structure of the PTP1B YopH WPD loop Chimera 3 bound to vanadate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-1 |
Synchrotron site | SSRL |
Beamline | BL9-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-04-17 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97946 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 88.586, 88.586, 104.658 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.293 - 1.549 |
R-factor | 0.1874 |
Rwork | 0.187 |
R-free | 0.19920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qkp |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.610 |
High resolution limit [Å] | 1.549 | 3.340 | 1.550 |
Rmerge | 0.071 | 0.048 | 1.073 |
Rmeas | 0.073 | 0.049 | 1.121 |
Rpim | 0.017 | 0.011 | 0.316 |
Number of reflections | 67840 | 7143 | 6493 |
<I/σ(I)> | 10.6 | ||
Completeness [%] | 97.6 | 98.4 | 94.4 |
Redundancy | 18.1 | 18.8 | 11.6 |
CC(1/2) | 0.999 | 0.726 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.2 | 277.15 | tris hydrochloride pH 8.2, magnesium acetate tetrahydrate, PEG 8000 and benzamidine |