6X7V
Crystal Structure of the Human Nudix Hydrolase Nudt16
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-24 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97910 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.686, 137.922, 54.990 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.280 - 2.300 |
R-factor | 0.2275 |
Rwork | 0.224 |
R-free | 0.28730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mgm |
Data reduction software | XDS (20180808) |
Data scaling software | XDS (20180808) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.300 | 2.440 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.066 | 0.765 |
Number of reflections | 28854 | 4458 |
<I/σ(I)> | 10.5 | |
Completeness [%] | 97.6 | 95.3 |
Redundancy | 4.1 | 4.2 |
CC(1/2) | 0.998 | 0.746 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.2 M ammonium chloride, 20% (w/v) PEG 3350, 0.1 M MES pH 5.5 |