6WZU
The crystal structure of Papain-Like Protease of SARS CoV-2 , P3221 space group
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-05-12 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 81.986, 81.986, 134.345 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.840 - 1.790 |
R-factor | 0.1607 |
Rwork | 0.160 |
R-free | 0.17410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wrh |
RMSD bond length | 0.010 |
RMSD bond angle | 1.492 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.840 | 48.840 | 1.830 |
High resolution limit [Å] | 1.790 | 4.880 | 1.790 |
Rmerge | 0.137 | 0.086 | 1.781 |
Rmeas | 0.142 | 0.090 | 1.858 |
Rpim | 0.037 | 0.024 | 0.523 |
Number of reflections | 49598 | 2691 | 2456 |
<I/σ(I)> | 6.6 | 1.72 | |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 14.2 | 13.9 | 12.4 |
CC(1/2) | 0.997 | 0.632 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 277 | 0.1 M acetate buffer, 0.8 NaH2PO4/1.2 M K2HPO4, seeds from PLprotease C111S mutant crystals |