6WXP
De novo TIM barrel-ferredoxin fold fusion homodimer with 4-glutamate centre TFD-EE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-18 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 43.910, 101.160, 117.730 |
Unit cell angles | 90.00, 95.50, 90.00 |
Refinement procedure
Resolution | 46.440 - 2.500 |
R-factor | 0.2298 |
Rwork | 0.227 |
R-free | 0.28080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Rosetta model of TFD broken into TIM and FD fragments and searched independently |
RMSD bond length | 0.002 |
RMSD bond angle | 0.456 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18rc2_3793) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.440 | 2.589 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.052 | 0.505 |
Rmeas | 0.063 | 0.616 |
Rpim | 0.035 | 0.346 |
Number of reflections | 34814 | 3455 |
<I/σ(I)> | 14.17 | 2.1 |
Completeness [%] | 97.9 | 96.05 |
Redundancy | 3.1 | 2.9 |
CC(1/2) | 0.999 | 0.776 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1 M HEPES pH 7.5, 10-15 % PEG 4000, and 5-10 % iso-propanol |