6WV8
Takifugu rubripes VKOR-like C138S mutant with vitamin K1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-09 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.167, 61.490, 167.211 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.570 - 3.010 |
R-factor | 0.2573 |
Rwork | 0.255 |
R-free | 0.29270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2b3p |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18_3855) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.050 |
High resolution limit [Å] | 3.000 | 8.130 | 3.000 |
Rmerge | 0.130 | 0.045 | 0.690 |
Rmeas | 0.159 | 0.055 | 0.850 |
Rpim | 0.091 | 0.031 | 0.487 |
Total number of observations | 30113 | ||
Number of reflections | 10986 | 598 | 562 |
<I/σ(I)> | 6.9 | ||
Completeness [%] | 93.9 | 88.3 | 98.9 |
Redundancy | 2.7 | 2.7 | 2.8 |
CC(1/2) | 0.996 | 0.413 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 6 | 295 | 25% PEG 400, 300 mM ammonium fluoride, 0.1 M MES pH 6.0 |