6WTG
SdeA DUB Domain in complex with Ubiquitin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-04-25 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.033 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 31.257, 43.208, 195.964 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.190 - 2.630 |
R-factor | 0.2059 |
Rwork | 0.204 |
R-free | 0.24280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cra |
RMSD bond length | 0.002 |
RMSD bond angle | 0.457 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.670 |
High resolution limit [Å] | 2.620 | 2.620 |
Rpim | 0.082 | 0.398 |
Number of reflections | 8314 | 394 |
<I/σ(I)> | 10.6 | 2.7 |
Completeness [%] | 99.9 | 100 |
Redundancy | 5.9 | 5.9 |
CC(1/2) | 0.987 | 0.773 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 298 | 0.1 M bicine pH 9.0, 65% (v/v) MPD |