6WS6
Structural and functional analysis of a potent sarbecovirus neutralizing antibody
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2020-03-31 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9713 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 132.590, 132.590, 301.240 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 93.760 - 3.300 |
R-factor | 0.1899 |
Rwork | 0.188 |
R-free | 0.22680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6nb8 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.18rc4-3812) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 121.355 | 93.755 | 3.480 |
High resolution limit [Å] | 3.300 | 10.440 | 3.300 |
Rmerge | 0.049 | 0.750 | |
Rmeas | 0.187 | 0.052 | 0.783 |
Rpim | 0.054 | 0.016 | 0.225 |
Total number of observations | 493741 | 15628 | 70944 |
Number of reflections | 41395 | 1506 | 5912 |
<I/σ(I)> | 13.2 | 29.9 | 3.5 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 11.9 | 10.4 | 12 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 293 | 1.1 M Sodium Malonate, 0.1 M HEPES, pH 7.0 and 0.5% (w/v) Jeffamine ED-2001 |