6WE0
Wheat dwarf virus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-05 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97910 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.572, 50.010, 73.441 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.340 - 1.800 |
R-factor | 0.193 |
Rwork | 0.192 |
R-free | 0.21620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6q1m |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.340 | 1.864 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.075 | 0.851 |
Rmeas | 0.084 | 0.963 |
Number of reflections | 15366 | 1551 |
<I/σ(I)> | 14.17 | 2.05 |
Completeness [%] | 95.2 | 98.54 |
Redundancy | 4.4 | 4.3 |
CC(1/2) | 0.997 | 0.571 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 12% w/v PEG 8000, 0.1 M sodium cocadylate, pH 6.5, 0.2M zinc acetate, 25% glycerol |