6W7Z
RNF12 RING domain in complex with Ube2d2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-14 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9790 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.441, 50.453, 54.375 |
Unit cell angles | 90.00, 99.72, 90.00 |
Refinement procedure
Resolution | 47.740 - 1.800 |
R-factor | 0.1795 |
Rwork | 0.178 |
R-free | 0.21080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | SAD-phased structure of RNF12-Ube2d2 (undeposited model) |
RMSD bond length | 0.002 |
RMSD bond angle | 0.530 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.29) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.740 | 1.840 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.070 | 0.711 |
Rmeas | 0.080 | 0.817 |
Rpim | 0.039 | 0.397 |
Total number of observations | 99121 | |
Number of reflections | 24099 | 1405 |
<I/σ(I)> | 12.3 | |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 4.1 | 4.1 |
CC(1/2) | 0.998 | 0.813 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 15-20% PEG 3350, 100-200 mM ammonium formate |