6VUF
Crystal structure of BRD4 bromodomain 1 with N-methylpyrrolidin-2-one (NMP) derivative 7h (4-(1-methyl-5-oxopyrrolidin-3-yl)-N-propylbenzenesulfonamide)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-05-05 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.95370 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 36.030, 79.205, 46.819 |
Unit cell angles | 90.00, 92.82, 90.00 |
Refinement procedure
Resolution | 40.270 - 1.590 |
R-factor | 0.2183 |
Rwork | 0.216 |
R-free | 0.26940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dw2 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.951 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.760 | 1.680 |
High resolution limit [Å] | 1.590 | 1.590 |
Rmerge | 0.079 | 0.642 |
Rpim | 0.044 | 0.357 |
Number of reflections | 35273 | 5067 |
<I/σ(I)> | 10.3 | 1.9 |
Completeness [%] | 99.8 | |
Redundancy | 4.2 | |
CC(1/2) | 0.997 | 0.765 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277.15 | 0.2 M sodium nitrate, 35% PEG3350, 6% v/v ethylene glycol |