6VL3
The crystal structure of the 2009 H1N1 PA endonuclease mutant I38T in complex with SJ000986436
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-09-13 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.000 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 89.804, 89.804, 132.729 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.180 - 2.680 |
R-factor | 0.2551 |
Rwork | 0.253 |
R-free | 0.29470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vpt |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.880 | 2.810 |
High resolution limit [Å] | 2.680 | 2.680 |
Rmerge | 0.025 | 0.296 |
Rmeas | 0.030 | 0.350 |
Rpim | 0.015 | 0.177 |
Number of reflections | 7558 | 1001 |
<I/σ(I)> | 16 | 2 |
Completeness [%] | 95.8 | 97.9 |
Redundancy | 3.4 | 3.5 |
CC(1/2) | 1.000 | 0.889 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M HEPES PH 7.8, 1 M AMMONIUM SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15 |