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6VHV

Klebsiella oxytoca NpsA in complex with 3-hydroxyanthranilyl-AMSN

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-24
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.03322
Spacegroup nameI 2 2 2
Unit cell lengths74.689, 87.817, 165.778
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution68.100 - 2.890
R-factor0.2198
Rwork0.218
R-free0.26200
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6vhu
RMSD bond length0.004
RMSD bond angle0.556
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwarePHENIX (1.15_3459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]68.1002.950
High resolution limit [Å]2.8902.890
Rmeas0.1632.261
Rpim0.0630.858
Number of reflections12516605
<I/σ(I)>9.40.9
Completeness [%]99.9100
Redundancy6.56.8
CC(1/2)0.9970.412
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH6.6296well solution: 400 mM imidazole pH 6.6, 10% w/v PEG8000/10000/12000/20000, 2.5% w/v 1,3-dimethylimidazolium dimethyl phosphate protein solution (16 mg/mL): 10 mM HEPES pH 8.0, 25 mM NaCl, 0.4 mM TCEP, 5 mM 3HA-AMSN droplet: 2 uL protein solution, 1 uL well solution

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PDB entries from 2024-05-15

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