6VHV
Klebsiella oxytoca NpsA in complex with 3-hydroxyanthranilyl-AMSN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-24 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03322 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 74.689, 87.817, 165.778 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 68.100 - 2.890 |
R-factor | 0.2198 |
Rwork | 0.218 |
R-free | 0.26200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vhu |
RMSD bond length | 0.004 |
RMSD bond angle | 0.556 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.15_3459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 68.100 | 2.950 |
High resolution limit [Å] | 2.890 | 2.890 |
Rmeas | 0.163 | 2.261 |
Rpim | 0.063 | 0.858 |
Number of reflections | 12516 | 605 |
<I/σ(I)> | 9.4 | 0.9 |
Completeness [%] | 99.9 | 100 |
Redundancy | 6.5 | 6.8 |
CC(1/2) | 0.997 | 0.412 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.6 | 296 | well solution: 400 mM imidazole pH 6.6, 10% w/v PEG8000/10000/12000/20000, 2.5% w/v 1,3-dimethylimidazolium dimethyl phosphate protein solution (16 mg/mL): 10 mM HEPES pH 8.0, 25 mM NaCl, 0.4 mM TCEP, 5 mM 3HA-AMSN droplet: 2 uL protein solution, 1 uL well solution |