6VHE
FphF, Staphylococcus aureus fluorophosphonate-binding serine hydrolases F, KT130 bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-21 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.954 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 87.126, 87.126, 454.920 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.240 - 1.940 |
R-factor | 0.1701 |
Rwork | 0.168 |
R-free | 0.20860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vh9 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (dev-3699) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.240 | 49.240 | 1.980 |
High resolution limit [Å] | 1.940 | 9.690 | 1.940 |
Rmerge | 0.152 | 0.033 | 1.957 |
Rmeas | 0.154 | 0.033 | 1.987 |
Rpim | 0.024 | 0.006 | 0.342 |
Total number of observations | 25358 | 145969 | |
Number of reflections | 77616 | 809 | 4466 |
<I/σ(I)> | 23.1 | 87.5 | 2.2 |
Completeness [%] | 100.0 | 99.4 | 99.5 |
Redundancy | 39.3 | 31.3 | 32.7 |
CC(1/2) | 1.000 | 1.000 | 0.804 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289.15 | 0.25 uL ~6.6 mg/ml FphF+KT130 (0.2 mM KT130, 20% DMSO, 8 mM HEPES pH 7.5, 40 mM NaCl) were mixed with 0.2 uL of reservoir solution. Sitting drop reservoir contained 50 uL of 0.8 M sodium formate, 10% w/v PEG 8000, 10% w/v PEG 1000 and 0.1 M HEPES pH 7.0. Crystals were soaked for ~20 seconds in 75% reservoir solution and 25% glycerol prior to freezing in liquid nitrogen |