Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6VG1

xenopus protocadherin 8.1 EC1-6

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2019-04-05
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9792
Spacegroup nameP 1 21 1
Unit cell lengths146.645, 42.393, 167.471
Unit cell angles90.00, 110.60, 90.00
Refinement procedure
Resolution38.270 - 2.000
R-factor0.2544
Rwork0.253
R-free0.29720
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6vfq 6vfv
RMSD bond length0.006
RMSD bond angle0.814
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.0002.030
High resolution limit [Å]2.0002.000
Rmerge0.1305.280
Number of reflections594756132
<I/σ(I)>5.8
Completeness [%]97.5
Redundancy4.4
CC(1/2)1.0000.370
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.529610% (w/v) PEG 8000, 20% (v/v) ethylene glycol, 0.135M nitrate-phosphate-sulfate mix (0.045M sodium phosphate dibasic dihydrate, 0.045M Ammonium sulfate, 0.045 M sodium nitrate; Molecular Dimensions), 0.1M MES/imidazole buffer pH 6.5 with no further cryoprotection

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon