6VFR
Crystal structure of human protocadherin 18 EC1-EC4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-29 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9792 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 126.959, 176.942, 71.872 |
Unit cell angles | 90.00, 101.42, 90.00 |
Refinement procedure
Resolution | 19.900 - 2.790 |
R-factor | 0.2376 |
Rwork | 0.236 |
R-free | 0.27230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vfq |
RMSD bond length | 0.014 |
RMSD bond angle | 0.755 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.920 |
High resolution limit [Å] | 2.790 | 2.790 |
Rmerge | 0.083 | 1.240 |
Rmeas | 0.094 | 1.410 |
Rpim | 0.042 | 0.640 |
Number of reflections | 38201 | 4506 |
<I/σ(I)> | 10.2 | 1.4 |
Completeness [%] | 97.2 | 91.4 |
Redundancy | 4.8 | 4.6 |
CC(1/2) | 1.000 | 0.830 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 296 | 13% (w/v) PEG 20 000, 0.1M MES pH 6.5, with 30% (v/v) ethylene glycol added as cryoprotectant |