6VDZ
Crystal structure of reduced SfmD by soaking with sodium hydrosulfite
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL9-2 |
| Synchrotron site | SSRL |
| Beamline | BL9-2 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-12-18 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.9795 |
| Spacegroup name | P 31 2 1 |
| Unit cell lengths | 59.883, 59.883, 160.744 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 49.360 - 2.950 |
| R-factor | 0.2663 |
| Rwork | 0.260 |
| R-free | 0.32540 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6vdp |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | PHENIX |
| Refinement software | PHENIX (1.17.1-3660) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 3.000 |
| High resolution limit [Å] | 2.950 | 8.000 | 2.950 |
| Rmerge | 0.082 | 0.057 | 1.510 |
| Rmeas | 0.088 | 0.061 | 1.606 |
| Rpim | 0.030 | 0.021 | 0.534 |
| Total number of observations | 58396 | ||
| Number of reflections | 7467 | 442 | 372 |
| <I/σ(I)> | 8.1 | ||
| Completeness [%] | 99.0 | 99.1 | 99.5 |
| Redundancy | 7.8 | 7.8 | 8 |
| CC(1/2) | 0.997 | 0.919 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.1 M Tris pH 8.5, 0.2 M magnesium chloride, 30% PEG 4000 |






