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6VCK

Crystal structure of E.coli RppH-DapF in complex with GDP, Mg2+ and F-

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2019-07-18
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.97910
Spacegroup nameC 2 2 21
Unit cell lengths161.840, 193.601, 51.037
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.930 - 2.690
R-factor0.2301
Rwork0.226
R-free0.26820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6d1v
RMSD bond length0.005
RMSD bond angle0.783
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.16_3546)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.9302.800
High resolution limit [Å]2.6902.700
Number of reflections226472203
<I/σ(I)>24.56
Completeness [%]99.4
Redundancy6.6
CC(1/2)0.9950.698
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP9.2291.1530% (v/v) PEG400, 0.1 M CHES, pH 9.2

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PDB entries from 2024-05-15

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