6VBQ
Crystal structure of anti-HIV-1 antibody DH822 bound to gp120 V2 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-13 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | P 31 |
Unit cell lengths | 75.072, 75.072, 312.874 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.678 - 2.116 |
R-factor | 0.1819 |
Rwork | 0.181 |
R-free | 0.21080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4hk0 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.14_3228) |
Refinement software | PHENIX (1.14_3228) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.150 |
High resolution limit [Å] | 2.116 | 2.116 |
Rpim | 0.053 | 0.304 |
Number of reflections | 112193 | 7725 |
<I/σ(I)> | 13.6 | |
Completeness [%] | 99.7 | |
Redundancy | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 292 | 18% 2-propanol, 20% PEG 4000, 0.1M sodium citrate pH 5.5 |