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6VAQ

Crystal structure of glucose-6-phosphate dehydrogenase V394L mutant in complex with catalytic NADP+

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-07-07
DetectorPSI PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameP 41 21 2
Unit cell lengths158.973, 158.973, 113.186
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.740 - 2.950
R-factor0.2099
Rwork0.209
R-free0.22230
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6e08
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.74039.7403.130
High resolution limit [Å]2.9508.7302.950
Rmerge0.1080.0421.102
Rmeas0.1130.0441.145
Total number of observations406400
Number of reflections3086613304813
<I/σ(I)>19.2952.582.11
Completeness [%]99.799.198.4
Redundancy13.16711.23213.59
CC(1/2)0.9990.9990.814
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293MES, magnesium chloride, PEG3350, NADP

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PDB entries from 2024-05-15

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