6V74
Crystal Structure of Human PKM2 in Complex with L-asparagine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2017-09-15 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.000030 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 80.990, 154.580, 92.150 |
Unit cell angles | 90.00, 102.54, 90.00 |
Refinement procedure
Resolution | 58.620 - 2.320 |
R-factor | 0.2349 |
Rwork | 0.233 |
R-free | 0.27480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6nu1 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 77.747 | 77.747 | 2.450 |
High resolution limit [Å] | 2.320 | 7.340 | 2.320 |
Rmerge | 0.020 | 0.584 | |
Rmeas | 0.070 | 0.024 | 0.722 |
Rpim | 0.026 | 0.009 | 0.292 |
Total number of observations | 632664 | 22601 | 72775 |
Number of reflections | 92793 | 3064 | 12554 |
<I/σ(I)> | 19.9 | 60.8 | 2.4 |
Completeness [%] | 97.2 | 98.9 | 90.2 |
Redundancy | 6.8 | 7.4 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.2 M NaBr, 0.1 M Bis-Tris propane, 20% PEG 3350 |