6V2G
Complex of mutant (K162M) of E. coli L-asparaginase II with L-Asp. Covalent acyl-enzyme intermediate and tetrahedral intermediate.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-05 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 62.097, 125.971, 76.376 |
Unit cell angles | 90.00, 96.70, 90.00 |
Refinement procedure
Resolution | 24.930 - 1.900 |
R-factor | 0.151 |
Rwork | 0.149 |
R-free | 0.20700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3eca monomer A |
RMSD bond length | 0.019 |
RMSD bond angle | 2.285 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.930 |
High resolution limit [Å] | 1.900 | 5.150 | 1.900 |
Rmerge | 0.044 | 0.015 | 0.523 |
Rmeas | 0.053 | 0.017 | 0.658 |
Rpim | 0.029 | 0.009 | 0.393 |
Total number of observations | 289481 | ||
Number of reflections | 90100 | 4688 | 3360 |
<I/σ(I)> | 13.7 | ||
Completeness [%] | 97.4 | 99.3 | 72.6 |
Redundancy | 3.2 | 3.6 | 2.3 |
CC(1/2) | 0.999 | 0.484 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 293 | 0.17 M sodium-citrate pH 6 and 18% (w/v) PEG3350, 5 mM L-Asp |