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6V0U

Crystal structure of the first bromodomain (BD1) of human BRD4 bound to bromosporine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2017-02-15
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths38.850, 42.990, 79.070
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.868 - 1.400
R-factor0.1691
Rwork0.168
R-free0.18530
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3mxf
RMSD bond length0.006
RMSD bond angle0.888
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.11.1-2575_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]34.86834.8681.440
High resolution limit [Å]1.4006.2601.400
Rmerge0.0520.0340.344
Rmeas0.0560.0370.370
Total number of observations191810
Number of reflections266363561916
<I/σ(I)>23.2546.255.67
Completeness [%]99.499.798.4
Redundancy7.2016.147.24
CC(1/2)0.9990.9980.953
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2910.2 M (NH4)2SO4, 0.1 M Tris (pH 8.5), and 25% PEG 3350

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PDB entries from 2024-05-15

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