6V06
Crystal structure of Beta-2 glycoprotein I purified from plasma (pB2GPI)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | Cu FINE FOCUS |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-08-01 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 160.843, 166.943, 114.049 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.600 - 2.400 |
R-factor | 0.202 |
Rwork | 0.201 |
R-free | 0.23600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1c1z |
RMSD bond length | 0.013 |
RMSD bond angle | 2.031 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.440 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.079 | 0.506 |
Number of reflections | 59497 | 2899 |
<I/σ(I)> | 21.1 | 2.4 |
Completeness [%] | 98.8 | 97.1 |
Redundancy | 8.6 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | 100 mM HEPES, 1.5 M AmSO4, 20 mM CaCl2 and 2% glycerol |