6UYN
Crystal structure of influenza A virus hemagglutinin from A/Ohio/09/2015 bound to the stalk-binding CR6261 antibody Fab
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-10-09 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | I 21 3 |
Unit cell lengths | 205.590, 205.590, 205.590 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.260 - 2.850 |
R-factor | 0.2104 |
Rwork | 0.209 |
R-free | 0.24750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3gbn |
RMSD bond length | 0.005 |
RMSD bond angle | 0.702 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.260 | 35.260 | 2.920 |
High resolution limit [Å] | 2.850 | 12.750 | 2.850 |
Rmerge | 0.084 | 0.044 | 0.890 |
Rmeas | 0.091 | 0.049 | 0.962 |
Total number of observations | 233927 | ||
Number of reflections | 33765 | 397 | 2494 |
<I/σ(I)> | 15.52 | 30.29 | 2.17 |
Completeness [%] | 99.9 | 93.9 | 100 |
Redundancy | 6.928 | 5.332 | 7.055 |
CC(1/2) | 0.998 | 0.997 | 0.740 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 287 | InvbR.18715.a.KN11.PD38335/CR6261 Fab PD38376 at 10.3 mg/mL against Morpheus screen condition C6: 10% PEG 8000, 20% ethylene glycol, 0.1 M MOPS/HEPES pH 7.5, 0.03 M each sodium nitrate, disodium hydrogen phosphate, ammonium sulfate, crystal tracking ID 311368c6, unique puck ID dai6-1 |